| Objective | How to unlock
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| Chapter 1 - Mission 1 | Involve Loki in the fight. (Go next to her with both characters and interact)
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| Chapter 1 - Mission 2 | Kill all enemies
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| Chapter 1 - Mission 3 | Destroy all the Mytrans attacking the cities
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| Chapter 1 - Mission 4 | Capture the temple before the end of round 10
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| Chapter 1 - Mission 5 | Find the secret technology on a small remote island. (northwest of the map)
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| Chapter 1 - Mission 6 | Unlock the secret mission. (Move a unit to a strange-looking item at the new part of the map)
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| Chapter 1 - Mission 6s | Get the secret technology hidden at one of the cells.(in the middle of the northwestern-most cell)
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| Chapter 1 - Mission 7 | Hover over the chasm with one unit. (before the exit point)
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| Chapter 2 - Mission 10 | Get full immunity against the insect. (located southwest of the map)
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| Chapter 2 - Mission 11 | Don't let anyone die in your army
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| Chapter 2 - Mission 12 | Occupy both temples
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| Chapter 2 - Mission 13 | Defeat Jama without killing other enemy units
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| Chapter 2 - Mission 14 | Defeat a human unit with the turrets
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| Chapter 2 - Mission 8 | Capture the armory and the research center to gather information
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| Chapter 2 - Mission 9 | Do not let Nunzio Escape
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| Chapter 2 - Mission 9s | Capture every building in the human base
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| Chapter 3 - Mission 15 | Neutralize the defense system. (Destroy the 2 power plants)
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| Chapter 3 - Mission 16 | Save at least one person from the group facing the Kondor forces. (save the Buggies next to the first two enemy Destroyers after crossing bridge)
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| Chapter 3 - Mission 16s | Find Bakunin's lost supplies. (in the middle area, and return to him)
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| Chapter 3 - Mission 17 | Defeat Agni without any casualties
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| Chapter 3 - Mission 18 | Meet the mysterious Jon Remedy (at the end of the southeast path, near the prang)
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| Chapter 3 - Mission 19 | Use the secret exit to leave. (After freeing the scientist, the secret exit is located at the west, interact to open)
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| Chapter 3 - Mission 20 | Finish the mission in 25 turns
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| Chapter 3 - Mission 21 | Destroy the radar unit (Intruder seen after defeating first batch of enemies - kill the scout)
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| Chapter 4 - Mission 22 | Don't kill any humans when using Eli or Rachel
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| Chapter 4 - Mission 23 | Protect all allied units. (aka Don't let anyone die?)
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| Chapter 4 - Mission 24 | Capture all radar stations
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| Chapter 4 - Mission 25 | Get access to the engine room. (enter small room under Loki for Green Card)
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| Chapter 4 - Mission 25s | Finish the mission without killing a hostile unit
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| Chapter 4 - Mission 26 | Destroy only two of the door controllers
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